PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BS_61B30E3E4.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 238aa    MW: 27347.3 Da    PI: 9.2761
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BS_61B30E3E4.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.1e-171057148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT++Ed++lv+ v+++G ++W+ +a+  g++Rt+k+c++rw +yl
  Traes_4BS_61B30E3E4.1 10 KGPWTEQEDLQLVCTVRLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYL 57
                           79********************************************97 PP

2Myb_DNA-binding55.21.6e-1764108248
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            gr++++E+ l++++++++G++ W++Iar+++ gRt++++k++w++++
  Traes_4BS_61B30E3E4.1  64 GRMSPQEEHLIIELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 108
                            89*******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.143557IPR017930Myb domain
SuperFamilySSF466898.61E-298104IPR009057Homeodomain-like
SMARTSM007171.4E-14959IPR001005SANT/Myb domain
PfamPF002493.8E-161057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-191164IPR009057Homeodomain-like
CDDcd001675.36E-111257No hitNo description
PROSITE profilePS5129425.81258112IPR017930Myb domain
SMARTSM007174.3E-1562110IPR001005SANT/Myb domain
PfamPF002496.5E-1664107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-2465111IPR009057Homeodomain-like
CDDcd001673.08E-1165108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MVTVQDEMRK GPWTEQEDLQ LVCTVRLFGD RRWDFVAKVS GLNRTGKSCR LRWVNYLHPG  60
LKHGRMSPQE EHLIIELHAR WGNRWSRIAR RLPGRTDNEI KNYWRTHMRK KAQERKTNMS  120
PSSSSSSFTY QSCLLETAPI IRMDGGSTHN GTTCFSSVLK SNQSVMDGYS MDQIWKEIEA  180
PAMLPIDKKA CSNLPCPVLP SPMGDRYCPP EVVWKMDNGD LKMLAPQFGY GNGERSCY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-2771121105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3672180.0AK367218.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2053B03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617959.11e-131PREDICTED: myb-related protein MYBAS1
SwissprotQ53NK61e-133MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBLW5EB450.0W5EB45_WHEAT; Uncharacterized protein
STRINGLOC_Os11g47460.11e-131(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.36e-77myb domain protein 59
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]